Progress: Continue working on completing the remove program.

Progress: Continue working on completing the remove program.

Clean up the code a bit and fix some obvious mistakes.
Problems with the parameters are now fixed.

Start organizing and fixing the simulate.
Added some strings that may or may not be needed and will be removed if the future if it turns out they are not needed.

Add and use the process_operate_file_simulate() function.
The process_operate_file() shouldn't be called within simulate.

Do some work regarding directories and the empty state.

Additional flags are added.
Add flag bits to designate that if the remove flag bit is set then it should be ignored.
It is ignored as do not remove or it is ignored as do not remove then throw an error.
Using a bit like this allows for the rest of the code to only care about when it should add the remove flag.
Only in cases that explicitly prevent removal should the remove not and remove fail flags be set.