For some reason going through the bootstrap example script reveals this problem but directly using the packaging system does not.
This likely means that there is a difference between the system fake program and the one used during the bootstrap example script process.
build_sources_program main/main.c
-build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/print.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/byte_dump.h
+build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/byte_dump.h
build_sources_documentation man
build_sources_program main/main.c
-build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/print.h main/print/data.h main/print/debug.h main/print/error.h main/print/message.h main/print/warning.h main/action.h main/control.h main/packet.h main/payload.h main/signal.h main/thread.h
+build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/print/data.h main/print/debug.h main/print/error.h main/print/message.h main/print/warning.h main/action.h main/control.h main/packet.h main/payload.h main/signal.h main/thread.h
build_sources_documentation man
build_sources_program main/main.c
-build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/load.h main/print.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/fss_identify.h
+build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/load.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/fss_identify.h
build_sources_documentation man
build_sources_library payload/fss_write.c payload/common.c payload/print.c
build_sources_headers main/fss_write.h main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/print/error.h main/print/message.h main/signal.h main/thread.h
-build_sources_headers basic/fss_write.h basic/common.h basic/print.h basic/private-common.h
+build_sources_headers basic/fss_write.h basic/common.h basic/print.h
build_sources_headers basic_list/fss_write.h basic_list/common.h basic_list/print.h
build_sources_headers embedded_list/fss_write.h embedded_list/common.h embedded_list/print.h
build_sources_headers extended/fss_write.h extended/common.h extended/print.h
build_sources_program main/main.c
-build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/bytesequence.h main/codepoint.h main/print.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/utf8.h
+build_sources_headers main/common.h main/common/define.h main/common/enumeration.h main/common/print.h main/common/string.h main/common/type.h main/bytesequence.h main/codepoint.h main/print/data.h main/print/error.h main/print/message.h main/process.h main/signal.h main/thread.h main/utf8.h
build_sources_documentation man